PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07430.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 174aa    MW: 18890.4 Da    PI: 10.5338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07430.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-201970156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             s+y+GVr ++ +gr++AeIrdp++   r+r++lg+f+ta++Aa+a++aa+++++g+
  Rsa1.0_07430.1_g00001.1 19 SRYRGVRKRP-WGRFAAEIRDPVK---RTRVWLGTFDTAQQAARAYDAAAREFRGA 70
                             79********.**********755...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-131969IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-221978IPR016177DNA-binding domain
CDDcd000186.27E-201979No hitNo description
Gene3DG3DSA:3.30.730.101.2E-312077IPR001471AP2/ERF domain
SMARTSM003801.4E-352083IPR001471AP2/ERF domain
PROSITE profilePS5103224.1842077IPR001471AP2/ERF domain
PRINTSPR003673.8E-112132IPR001471AP2/ERF domain
PRINTSPR003673.8E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKKDLKPDPN PVESNGKESR YRGVRKRPWG RFAAEIRDPV KRTRVWLGTF DTAQQAARAY  60
DAAAREFRGA KAKTNFPPTF LELNANKDGG FTRSPSQSST VDSASPTAAR LATLPHLELS  120
LGGGGGGAWY QVPVARPVYF YNSMKAFPPA ATCGGEKKPQ PLNLDLTLAP PTAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-201777263ATERF1
3gcc_A4e-201777263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590684.13e-91PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_013752445.13e-91PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803403e-56ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A078J4Q03e-91A0A078J4Q0_BRANA; BnaC06g41440D protein
TrEMBLA0A0D3CQM63e-91A0A0D3CQM6_BRAOL; Uncharacterized protein
STRINGBra039658.1-P7e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-48ethylene responsive element binding factor 4